Index

_

__eq__() (in module GWProt.GW_protein.GW_protein)

__len__() (in module GWProt.GW_protein.GW_protein)

C

compare_proteins_in_pymol() (in module GWProt.pymol_protein_viewer)

convolve_pIs() (in module GWProt.GW_protein_pI.GW_protein_pI)

D

downsample_by_indices() (in module GWProt.GW_protein.GW_protein) (in module GWProt.GW_protein_pI.GW_protein_pI)

downsample_n() (in module GWProt.GW_protein.GW_protein) (in module GWProt.GW_protein_pI.GW_protein_pI)

F

FGW_compute_lgd_data_lists() (in module GWProt.lgd_comparison.LGD_Comparison) FGW_compute_lgd_dict() (in module GWProt.lgd_comparison.LGD_Comparison)

FGW_lgd() (in module GWProt.GW_protein.GW_protein) (in module GWProt.GW_protein_pI.GW_protein_pI)

G

get_AP_scores() (in module GWProt.lgd_comparison) get_eccentricity() (in module GWProt.GW_protein.GW_protein) get_GW_dmat() (in module GWProt.lgd_comparison.LGD_Comparison) get_percentile_of_dict() (in module GWProt.lgd_comparison) get_switch_probabilities() (in module GWProt.switch_probabilities) GW_compute_lgd() (in module GWProt.lgd_comparison.LGD_Comparison) GW_lgd() (in module GWProt.GW_protein.GW_protein) GW_protein (class in GWProt.GW_protein) GW_protein_pI (class in GWProt.GW_protein_pI)

GWProt.FGW_matrices module GWProt.GW_protein module GWProt.GW_protein_pI module GWProt.lgd_comparison module GWProt.pymol_protein_viewer module

L

LGD_Comparison (class in GWProt.lgd_comparison)

M

make_cajal_cell() (in module GWProt.GW_protein.GW_protein) make_protein_from_pdb() (in module GWProt.GW_protein.GW_protein) max_rectangle_diagonal() (in module GWProt.switch_probabilities) module GWProt.FGW_matrices GWProt.GW_protein GWProt.GW_protein_pI GWProt.lgd_comparison GWProt.pymol_protein_viewer

N

normalize_lgd_dict() (in module GWProt.lgd_comparison)

P

preprocess() (in module GWProt.switch_probabilities)

R

raw_transferred_lgd() (in module GWProt.lgd_comparison.LGD_Comparison) reset_ipdm() (in module GWProt.GW_protein.GW_protein) run_FGW() (in module GWProt.GW_protein_pI.GW_protein_pI) run_FGW_data_lists() (in module GWProt.GW_protein.GW_protein) run_FGW_dict() (in module GWProt.GW_protein.GW_protein) run_FGW_diff_mat() (in module GWProt.GW_protein.GW_protein) run_FGW_seq_aln() (in module GWProt.GW_protein_pI.GW_protein_pI)

run_FUGW_data_lists() (in module GWProt.GW_protein.GW_protein) run_FUGW_dict() (in module GWProt.GW_protein.GW_protein) run_FUGW_diff_mat() (in module GWProt.GW_protein.GW_protein) run_GW() (in module GWProt.GW_protein.GW_protein) run_GW_from_cajal() (in module GWProt.GW_protein.GW_protein) run_GW_seq_aln() (in module GWProt.GW_protein.GW_protein) run_ssearch_indices() (in module GWProt.GW_protein.GW_protein) run_UGW() (in module GWProt.GW_protein.GW_protein)

S

scale_ipdm() (in module GWProt.GW_protein.GW_protein)

show_proteins_with_values() (in module GWProt.pymol_protein_viewer)

V

validate() (in module GWProt.GW_protein.GW_protein)

visualize_switch_probabibilities() (in module GWProt.switch_probabilities)

W

weighted_RMSD() (in module GWProt.weighted_alignment)